PP-LWT MEETING MINUTES 18 APRIL 2000 Attending: Blum, Fackler, Freeman, Mills, Moortgat, Prince AGENDA 1. Reports * Leg 188 cruise evaluations * Leg 188 Tech Report * Leg 189 Preliminary Tech Report 2. Other issues * Transit * Color reflectance * Bar codes * MSCL (Geotek) * Transfer of application custodianship 3. Action items * Tasks completed * Old tasks not completed * New tasks Appendix I: PP application task list, 18 April 2000 1. REPORTS 1.1. LEG 188 CRUISE EVALUATIONS PP scientists commented on three well-known problems that should be fixed ASAP: 1. Pycnometer did not perform well because of electronics problems and sea state sensitivity (see tech reports); 2. Problems with PWS user interface, particularly data saving (see "Upgrade PWS" on application task list); 3. MAD data upload was not functioning (see tech reports). In addition, one person suggested a lack of sufficient computers in the core lab which led PP scientists to occupy core description stations. 1.2. LEG 188 TECH REPORT Almost the entire PP lab was reassembled, reconnected, and/or rebuilt during the first part of the leg. The WCMST was relocated to the center of the core lab for better access. New belt retainers were installed to allow the core to be returned to the loading point without slipping on the timed drive gear. The control program was converted to the PC (Pentium III) platform. The MS drift measurement can now be made at the same point where zeroing occurred. [Better timing of drift measurement is not resolved yet.) Communication was changed from GPIB to the serial port for the MS. Part of the PWL data acquisition box from Geotek was replaced with a National Instruments oscilloscope board for acquisition of acoustic signal and displacement data. The new signal source has not been completed yet and the Geotek box is still used for that purpose. [Also, a new PWL sensor displacement system is in development (hard-coded opening mechanism instead of optical sensor) to provide more accurate and robust displacement measurements.] NGR data transfer is not up to speed yet (see "NGR Data Transfer" on application task list). It was discovered that new PCI Maestro boards must be purchased to change NGR (and GRA) data transfer from the slow serial to the faster DMA bus. Serious problems with the pycnometer at the first site were apparently fixed for the remainder of the leg: (1) Drierite was changed to a coarser material, (2) The gas bottle was moved closer to the pycnometer, and (3) the gas regulator was replaced. The second pycnometer was also installed and tested but had a different set of problems and was put away again. The Macintosh version of the MAD program was used because tests with the PC version showed problems at the beginning of the leg. Once the problems were ironed out and tests were positive at the end of the leg it was decided to use the PC version on Leg 189. The upload function did not work yet, however, and the data had to be uploaded offline with the generic upload routine. The PWS3 measurements showed apparent errors related to data saving problems and some other factor [displacement measurement? Is frequency exactly 500 kHz?] [see "Upgrade PWS" on application task list]. The AVS failed during mid-leg. The ETs diagnosed the problem in the relay that drives the motor, patched a quick fix, and ordered new parts. 1.3. LEG 189 PRELIMINARY TECH REPORT Summary of relevant issues received from Anastasia during the last few days. The MST boat snapped at one end and had to be replaced. New boats must be ordered. Track seems to be somewhat too fast now, causing positioning errors, hang-ups, and dumping of cores. Lost some PWL data when sprinkler pump had to be replaced. Generic upload routines for PWL, GRA, and MS work well. Scientists' recommendations for touching up the MST control program are being collected. On 15 April Anastasia reported some serious, apparent memory leak, problems with the MST program, resulting in very slow operation and disappearance of dialog windows. This is being addressed right now. Both pycnometers keep having problems. Volume could apparently not be measured for some period. The one instrument brought up from the second-look lab leaked and could not be calibrated - it was packed up to be sent to shore. The other instrument was fixed by the ETs (circuit board), placed closer to the helium bottle, and the serial cable was replaced - it seems to be working fine now. MAD upload problems persisted but the generic uploader was completed, bugs were fixed, and it seems to be working fine. Some PWS3 data were bad because the separation measurement was not zeroed correctly - this is a weakness in this system and should be eliminated with the MSCL and PWS4 installation in the future (see application task list for description). 2. OTHER ISSUES 2.1. TRANSIT Peter and Cyndi will join Anastasia in Sydney, and stay on for the Townsville-Guam transit, to exercise and troubleshoot all PP systems (tuning, calibration, data acquisition, data upload, data retrieval), assess data quality, identify and describe problems to be addressed, update the PP Handbook, and plan for ongoing and new tasks such as the deployment of the MSCL (Geotek). The IS representatives were alerted again that the ship test database needs to be functional for a successful test of data upload and retrieval. 2.2. COLOR REFLECTANCE Automated CR measurements were implemented on Leg 188, eliminating this applications task from the list. A color reflectance measurement parameter protocol was implemented at the Leg 189 port call. Observer and illumination standards should always be set to 10° and 65D. These settings should be recorded in the database for each run (section). Old color data will be recalculated using these parameters. Color parameters (X, Y, Z, L*, a*, b*) are not calculated by the AMST program anymore. They are recorded directly from the Minolta CM2002 by the AMST program and are available for upload. It was decided that the database group upload data and calculations (performed by the CM2002) directly into the database starting with Leg 189, and recalculate color parameter values for all previous legs (except the "bad data legs"). In addition, the database group will calculate color parameters for Leg 189 for comparison with the uploaded Minolta calculations. What standard data is the database group using to calculate XYZ? The constant factory values or the operators control measurement after white calibrations? Is the ASTM used to expand the spectrum for XYZ calculations? 2.3. BAR CODES Fackler will sail on the transit and Leg 190. One of his top priorities will be implementation of bar codes for the MST. This will be a basic implementation without fancy database checks. The human-readable section ID will be read, parsed, and entered into the appropriate fields in the MST program. 2.4. MSCL (GEOTEK) The PP hard core met earlier to discuss options for implementing the multi-sensor core logger (MSCL) from Geotek. The track should allow measurement of GRA, PWL (=PWS3), and MS on split cores, and perhaps on full cores (depending on implementation). Still need to decide if cores should be pushed or transported on a boat. One tentative plan is to 1. Confirm with SCIMP that the AVS can be removed (second-look lab); 2. Build a simple PWS4 system to replace PWS3 in part (perhaps in Downhole lab?); 3. Build a new PWS1/2 track at the auxiliary sampling table; 4. Get MSCL ready on shore (including new PWS3 and GRA; and perhaps MSP) 5. Dismantle present VS-track and install MSCL in its place. The main question is if (3) is possible in the rather crammed core lab. In any case. (3) to (5) are on hold until the higher-priority digital imaging is implemented. Logistical and resource options need to be re-evaluated at that time. 2.5. TRANSFER OF APPLICATION CUSTODIANSHIP The WCMST application custodianship has been transferred to the ISD. The next target for transfer is the AMST program. 3. ACTION ITEMS (ATL = PP application task list; JRL = Janus Review List; G2-2 = JRL Group 2, priority 2) 3.1. TASKS COMPLETED Application development tasks € Automated CR (eliminate from ATL and JRL-G2-11) € Implement updated MAD (eliminate from ATL and JRL-G3- 16) Other tasks € Reinstalled PP lab systems during Leg 188. € Converted MST program to the PC platform € Transferred custodian ship for MST program from Mills to the ISD 3.2. OLD TASKS NOT COMPLETED Application development tasks € NGR (and GRA) data transfer (see ATL; G3-9) [Mills]. € Upgrade PWS (see ATL; G2-3) [Ledwon/Mills]. € MAD control measurements (see ATL; G3-13) [ISD/Blum]. € PWL calibration report (see ATL and JRL-G3-17) [ISD/Blum/Mills] € TC user interface (see ATL; G2-7) [Becker/Blum]. € TC data model (see ATL; G3-12) [Mithal/Blum]. € Implement bar codes (see ATL; G2-2) [ISD/Mills]. € WCMST threshold warnings (see ATL; G3-10) [ISD/Mills/Blum]. € MSL drift correction (partly addressed) (see ATL; G3- 22) [Mills/Blum]. € WCMST control data (see ATL; G2-13) [Mills/Blum/ISD]. € Implement PWS4 system (see ATL; G2-14) [Mills/Ledwon]. € Simultaneous MSP (MSCL or AMST) (see ATL; G2-16) [Mills]. € Upgrade "Strength" (on hold; see ATL; G3-28) Other tasks € Upgrade PWL displacement measurement [Mills]. € Upgrade PWL signal source [Mills]. € Purchase a third pycnometer [Prince/Julson]. € Prepare an upgraded PWS1/2 (& AVS) system to free up the space for the MSCL. € Finalize plan for MSCL (Geotek) installation [PP LWT]. 3.3. NEW TASKS Application development tasks € Fix MAD report (see ATL) [ISD/Blum]. Other tasks € Specify and order spare core boats [Mills] € Order PCI Maestro boards for NGR (and GRA) data transfer [Mills] € What happened to WCMST control program (or system software) on Leg 189 [Mills]. € Test MST logging speed and reported core boat problems [Ledwon/Blum/Prince]. € Verify/specify scientists' problems/suggestions for MST program fixes (transit) [Blum]. € Clarify with SCIMP if AVS is coming off the track or not [Blum]. € Investigate how X,Y,Z are calculated in respect to which calibration data [Freeman/Clark] € Database group to present their color calculations for comparison with CM2002 calculations for Leg 189 [Clark/Blum] APPENDIX I: PP APPLICATION TASK LIST, 18 APRIL, 2000 REFERENCE: NGR DATA TRANSFER CONTACT: PP-LWT DATE: 9/21/99; modified 12/3/99 DATA SYSTEM: WCMST-NGR OBJECTIVE: Increase speed and/or quality of natural gamma ray data acquisition. RATIONALE: NGR data acquisition slows down core logging substantially (~200% overhead time) because writing the data to the local disk takes more time than measuring it and writing it to the multi-channel buffer. TASK(S): At least double present rate (or sampling resolution) of NGR (and overall WCMST) data acquisition by upgrading NGR data transfer to present technology. This can be accomplished with the planned change of the WCMST control software to the PC platform. RESOURCES: Estimated 20 hr of hardware modifications and Labview programming. REFERENCE: FIX MAD REPORT CONTACT: PP-LWT DATE: 4/18/00 DATA SYSTEM: MAD OBJECTIVE: Provide accurate and user-friendly data report. RATIONALE: A recent review and discussion with the database group revealed that several format/labeling problems exist in the present MAD report. While accomplishing the minor changes to fix this, some additional modification could be done to enhance the logic and user's grasp of the different methods A, B, and C. TASK(S): Prepare a report according to the example (Excel table) provided by Blum. Re-arrange/eliminate some columns. Use one decimal precision for all % values (water content, porosity) and three decimals for all mass (g) and density (g/cm^3) values. Fix column headers according to example. RESOURCES: Estimated 10 hr of query writing. REFERENCE: MAD CONTROL MEASUREMENTS CONTACT: PP-LWT DATE: 9/21/99; modified 12/3/99 DATA SYSTEM: MAD OBJECTIVE: Save and make available MAD control (precision) data. RATIONALE: Volume control measurements (using calibration sphere) are routinely acquired with the pycnometer to check on the instrument's performance. These measurements have been used for a quick, real-time verification that the value did not deviate more than a certain empirical amount from the true value. A few years ago, the major pieces (new control program, data model) were put in place to keep a record of these control measurements that would not only allow a quantitative evaluation of the analytical error, but also correction or elimination of data affected by a malfunctioning cell. Today, these data are still not loaded and no web report exists. TASK(S): Load MAD control measurements into database and make them accessible through a web report. RESOURCES: Estimated 24 hr of programming. REFERENCE: IMPLEMENT BARCODES CONTACT: PP-LWT DATE: 9/21/99; modified 12/3/99 DATA SYSTEM: ALL PP SYSTEMS IN A FIRST PHASE OBJECTIVE: Avoid operator errors and save time by eliminating typing of section/sample id's. RATIONALE: Shipboard personnel are eager to use barcodes for core section and sample identification. The foundation has been laid a long time ago, and most pieces seem to be in place. However, implementation got stuck somewhere since barcodes cannot be used for any PP station at this time. TASK(S): Complete implementation of the use of barcodes for all PP stations, starting with the WCMST. RESOURCES: Estimated 120 hr of installation and programming. REFERENCE: PWL CALIBRATION DATA CONTACT:PP-LWG DATE: 9/21/99; modified 12/3/99; updated 4/18/00 DATA SYSTEM: WCMST-PWL OBJECTIVE: Fix calibration data report and check calculation of "Time M0" in MST program. RATIONALE: The present web query for PWL calibration data has a few errors that need to be fixed. This report is important for routine quality control and troubleshooting. Needs to be fixed. It is also possible that one coefficient (Time M0 = delay) is not calculated correctly in the MST program, which could explain observed deviation from expected values when measuring the water standard. TASK(S): 1. Web report: Eliminate redundant record for each measurement (query bug). Change label "Time M1" to "Time 1/M1". Increase format of "Time 1/M1" to 4 significant digits. 2. MST program: Increase format of "Time 1/M1" to 4 significant digits. Check if "Time M0" (= delay) is calculated using standard length as independent variable and measured time as dependent variable. Suspect the reverse is true. RESOURCES: Estimated 10 hr of programming. REFERENCE: UPGRADE "PWS" CONTACT: PP-LWT DATE: 9/21/99; modified 12/3/99 DATA SYSTEM: "PWS" OBJECTIVE: Provide a bug-free, more user-friendly PWS user interface incl. upload/editing (on PC platform). RATIONALE: Problems with the PWS user interface (part of present "VS" program) have been reported from many legs (e.g., description from Leg 177; many tech reports). Data saving, sample identification, and setting options are not clear and/or intuitive enough, resulting in bad and/or lost data. The upload and backup of "VS" data (using the JANUS.PhysProps application) has never been satisfactory. Finally, a general plan to transfer the program to a PC platform exists. TASK(S): Option 1: Quick-fix Mac version (minimum data saving problem and PWS separation problem). Option 2: Clone PC version. Split the "PWS" (PWS1, PWS2, and PWS3) from the "Strength" (AVS, TOR, and PEN) application in preparation for upcoming changes. Integrate the saving, upload and edit functions more closely with the operational interface. Upgrade the sample positioning hardware in the course of this project (hardware component!). RESOURCES: Estimated 120 hr of Labview programming and testing. REFERENCE: WCMST THRESHOLD WARNINGS CONTACT: PP-LWT DATE: 9/21/99; modified 12/3/99 DATA SYSTEM: WCMST-ALL SENSORS OBJECTIVE: Avoid collection of bad data, or loss of data, through real-time warnings. RATIONALE: Instrument problems (electronic failures, calibration problems, etc.) occur on almost every leg. Because WCMST data acquisition is automated and rapid, associated bad data collection is often discovered only days later and entire holes' worth of data may be lost. The original specifications for the new MST software in 1996 included a warning system based on control measurements taken with every section (partly implemented) but the project was never completed. In addition, threshold warnings should also be possible based on the core measurement values. TASK(S): Implement threshold warnings for the WCMST. Add an interface where the operator can enter high and low threshold values for each sensor, for the routine control measurement (default values) as well as for the core measurements (core-specific values), and make alarms go off if the acceptable values are not met. This would drastically reduce the risk of collection bad data by allowing the operators to discover instrument problems immediately. RESOURCES: Estimated 80 hr of Labview programming REFERENCE: MSL DRIFT CORRECTION CONTACT: PP-LWT DATE: 9/21/99; modified 12/3/99 DATA SYSTEM: WCMST-MSL OBJECTIVE: Improve accuracy of magnetic susceptibility drift correction. RATIONALE: The present implementation of the magnetic susceptibility drift correction is rather ineffective because of slack in timing and positioning of the reference measurement. TASK(S): The reference measurement for drift calculation should be taken as soon as possible after the core measurements, i.e., at the end of the last MS measurement rather than at the end of the section run (last NGR measurement) as presently implemented. Furthermore, the reference measurement should be taken at the same position as the zeroing took place. The MST run should therefore be interrupted at the end of the MS run, the boat moved into the zeroing position, and the reference measurement taken, before the section run is resumed. Ideally, zeroing and reference measurements are taken at the center of a 50-cm long "Control 2" standard, a liner filled with pure water and mounted at the top of the core boat. RESOURCES: Estimated 40 hr of Labview programming; fix to hardware configuration REFERENCE: WCMST CONTROL DATA CONTACT: PP-LWT DATE: 9/21/99; modified 12/3/99 DATA SYSTEM: WCMST-ALL SENSORS OBJECTIVE: Make MST control (precision) data consistently available. RATIONALE: Control measurements are used to evaluate and monitor instrument performance, calibrate or correct core measurements, or take test measurement independent of the core sample identification requirement. Control-1 measurements are performed on standards that are run like a core, in a separate run; they may be part of the ODP set of standards or any type of material or standard provided by the user. Control-2 measurements are routinely performed at the beginning of each section run, on a water standard that is mounted at the top of the core boat. Control-3 measurements are routinely performed "through air", at the end of a section run. Implementation of control measurements is at various stages, most problems appear to be related to the web reports and should be easy to fix. TASK(S): Complete implementation of the following control measurements, uploads, and web reports: GRA: Ctrl-1, Ctrl-2, Ctrl-3 MSL: Ctrl-1, (hold), Ctrl-3 NGR: Ctrl-1, (hold), Ctrl-3 PWS: Ctrl-1, Ctrl-2, N/A Specific tasks: 1. Check all Control web report header names and units, there are mistakes". 2. Change names of web reports from "Control" to "Control-1. 3. Create headers on the web report selection page ("Control-1", "Control-2", "Control-3") that are linked to a brief explanatory text about control measurements. 4. When NGR background measurements are taken on the long water core, write the data to the control-1 tables as well so they are available to the user. 5. The Control-2 water standard is too short for the NGR and MSL sensors; don't acquire these data until modifications to the WCMST allow implementation of a longer (50 cm) water standard on the core boat. 6. Control-3 values for GRA appear to be hard-coded or copied for each section rather than measured; the web report does not return any values. 7. For PWL, the Control-3 web report lists values although control-3 measurements are actually not possible with this sensor. RESOURCES: Estimated 200 hr of programming. REFERENCE: PWL CALIBRATION DATA CONTACT: PP-LWT DATE: 9/21/99; modified 12/3/99 DATA SYSTEM: WCMST-PWL OBJECTIVE: Make calibration data available. RATIONALE: The present web query for PWL calibration data returns all core data records associated with each calibration instead of only the calibration data. TASK(S): Fix the web query. RESOURCES: Estimated 40 hr of programming. REFERENCE: REPLACE JANUS.MST WITH "DIRECT" UPLOAD CONTACT: PP-LWT DATE: 9/21/99; modified 12/3/99 DATA SYSTEM: WCMST-ALL SENSORS OBJECTIVE: Make WCMST data upload and access more automated, thus efficient. RATIONALE: With the present WCMST upload application "JANUS.MST" (which does not handle NGR data anymore), data upload and availability on the ship require an experienced operator to perform regular batch jobs. Scientists often depend on ODP personnel to upload the data. There is presently a trend away from JANUS.* applications, and towards Labview upload programs that interact more smoothly with the instrument control/output components. TASK(S): Replace manual data upload with a more automated and integrated function that makes data more consistently available in near-real time. When the operator saves a section run, write data not only to local disk (backup), but also directly to the database. Don't save/upload if operator cancels the save dialog. At the same time, integrate the edit function and add a user-friendly interface that allows a run to be deleted or a section id to be changed. The local database (backup files) should be edited at the same time as the central database. Completion of this task would eliminate the JANUS.MST application from the inventory. RESOURCES: Estimated 200 hr of programming REFERENCE: IMPLEMENT PWS4 CONTACT: PP-LWT DATE: 9/21/99; modified 12/3/99 DATA SYSTEM: "PWS" OBJECTIVE: Separate instrument for P-wave velocity measurements on cylinders/cubes for better data. RATIONALE: At present, the P-wave velocity sensor 3 (PWS3) is used for measurement on both half-cores and discrete rock cubes or cylinders. The requirement of sensor spring loading for the former has resulted in a lot of bad data for the latter type of measurement because measurement conditions were different from calibration conditions. TASK(S): For this and other operational reasons, implement a separate PWS4 system. It would mostly be a stand-alone copy of the present PWS3 system. Once the hardware and controlling software (Labview) are completed, database model, upload, and data report can be completed almost identical to the PWS3 system. RESOURCES: Estimated 120 hr of Labview programming and testing. REFERENCE: TC USER INTERFACE CONTACT: PP-LWT DATE: 9/21/99; modified 12/3/99 DATA SYSTEM: TC OBJECTIVE: Ensure consistent thermal conductivity data collection. RATIONALE: The present TC program (instrument control) is the generic version written by the manufacturer (Teka, Berlin). It works very well, but it does not include an ODP sample identification interface or data upload protocol. The instrument output files are not consistently returned to ODP from the ship. Instead, spreadsheets prepared by scientists ad-hoc are the product of this system. This is one of the last standard data acquisition systems not integrated at all into the ODP routine and database. TASK(S): Write an ODP-specific user interface with consistent sample identification protocol (use of bar codes is preferred). Add data upload and backup on "Save", and database-editing functions (delete bad run, rename section and interval. Detailed specifications are available from P. Blum. RESOURCES: Estimated 24 hr of ODP programming; $4k for software; $7k for programming. REFERENCE: TC DATA MODEL CONTACT: PP-LWT DATE: 9/21/99; modified 12/3/99 DATA SYSTEM: TC OBJECTIVE: Ensure consistent thermal conductivity data archiving and access. RATIONALE: The present database model only accommodates the final, interpreted TC values. The values are uploaded on shore from inconsistent spreadsheet files prepared by scientists ad-hoc. This implementation is a quick fix and not compatible with the more rigorous data archiving and quality standards for other physical properties measurement systems. TASK(S): Develop new database model that accommodates all measurement parameters and raw data (time- temperature series) that are output by the Teka instrument. Draft specifications are available from P. Blum. RESOURCES: Estimated 40 hr of programming REFERENCE: SIMULTANEOUS MSP CONTACT: PP-LWT DATE: 9/21/99; modified 12/3/99 DATA SYSTEM: AMST-MSP OBJECTIVE: Allow simultaneous acquisition of color reflectance and point-sensor magnetic susceptibility. RATIONALE: At present, the magnetic susceptibility point sensor (MSP) measurements are not feasible on a high recovery leg. The first problem is related to the instruments integration time and is out of our control. The second problem is that MSP measurements require a dedicated run on the AMST. TASK(S): Implement MSP measurements such that they can be taken simultaneously with the color reflectance measurements, slowing the latter down slightly but allowing to take both measurements on moderate-high recovery legs (hardware component!) Integrate data upload and edit functions similarly as for the CR data and as part of the AMST upload and edit component. RESOURCES: Estimated 200 hr of Labview programming and testing. REFERENCE: MSP DATA MODEL CONTACT: PP-LWT DATE: 9/21/99; modified 12/3/99 DATA SYSTEM: AMST-MSP OBJECTIVE: Ensure consistent archiving/access of magnetic susceptibility point-sensor data. RATIONALE: The magnetic susceptibility point sensor (MSP) system is in development. Data acquisition must yet be completed. TASK(S): At this time, create the data model for MSP data so they can be loaded. RESOURCES: Estimated 80 hr of programming. REFERENCE: UPGRADE "STRENGTH" CONTACT: PP-LWT DATE: 9/21/99; modified 12/3/99 DATA SYSTEM: " STRENGTH " OBJECTIVE: Provide an upgraded interface, incl. upload/editing (on PC platform). RATIONALE: The "VSR" application needs an upgrade for some of the reasons outlined in UPGRADE "PWS" task, although it is not that much affected. However, if the PWS component is upgraded and transferred to the PC platform, the same needs to happen to the AVS component. The two applications should then replace the present "VSR" application, and the JANUS.PHYSPROPS upload application would be replaced as well. TASK(S): As the application is updated for the PC platform, split it from the "PWS" application. It will include AVS, TOR, and PEN. Integrate upload and editing functions. Upgrade the sample positioning hardware in the course of this project (hardware component!). RESOURCES: Estimated 80 hr of Labview programming and testing.